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Sjodahl 2017 Meta.

sjodahl_2017_meta.Rd

metadata associated with the bundled expresison data.

Usage

data(sjodahl_2017_meta)

Format

A data frame with 15697 rows (gene expressions) and 267 columns (samples).

Details

A data frame with meta data for the bundled samples.

  • sample_id. Unique sample ID.

  • cluster_order. Cluster order.

  • age. Age of patient, years.

  • gender. Patient gender.

  • region_cx. Geographical region of CX.

  • turb_grade. Pathological grading of TURB-specimen. 0 = WHO1999 Grade 2, 1 = WHO1999 Grade 3.

  • turb_stage. Pathological staging of TURB-specimen. 0 = Non muscle-invasive, 1 = Muscle invasive.

  • turb_skiv. Presence of keratinization or squamous differentiation in TURB-specimen. 0 = No presence, 1 = presence.

  • turb_cis. Presence of cis in the TURB-specimen. 0 = No presence, 1 = presence.

  • turb_lvi. Presence of lymphovascular invasion in the TURB-specimen. 0 = No presence, 1 = presence.

  • turb_necros. Presence of necrosis in TURB-specimen. 0 = no, 1 = present, 2 = extensive.

  • turb_apoptos. Presence of apoptosis in the TURB-specimen. 0 = No presence, 1 = presence.

  • variant_histology. Variant histology present 1 = yes, 0 = no.

  • cT. Clinical tumor state

  • cN. Clinical node state

  • hydroneph. Presence of hydronephrose. 0 = No presence, 1 = presence.

  • pTCx. Pathological tumor state at cystectomy.

  • pN. Patological node state at cystectomy.

  • adj_chemo. Adjeuvant chemotherapy. 0 = No presence, 1 = presence.

  • surv_os_event. Survival data, 1 = event, 0 = non event.

  • surv_os_time. Survival data, in months.

  • surv_css_event. Cancer specific survival, 1 = event, 0 = non event.

  • surv_css_time. Cancer specific survival, in months.

  • surv_pfs_event. Progression-free survival, 1 = event, 0 = non event.

  • surv_pfs_time. Progression-free survival, in months.