Calculate Signature Ratio Scores — int_ratio

Calculate proliferation and progression scores.

Usage

int_ratio_score(
  this_data = NULL,
  variable = NULL,
  gene_id = "hgnc_symbol",
  verbose = TRUE
)

Arguments

this_data: Required parameter. Data frame or matrix with expression values.
variable: Required parameter. Input should be one of the following; proliferation, or progression.
gene_id: Specify the type of gene identifier used in this_data. Accepted values are; hgnc_symbol (default) or ensembl_gene_id.
verbose: A logical value indicating whether processing messages will be printed or not. Default is TRUE.

Value

A list with two objects. 1, A data frame with scores for the selected variable. 2, A data frame indicating what genes from the incoming data are missing, based on the expected genes for signature calculations.

Details

Internal function called by int_calc_signatures(). Not meant for out of package use. Takes a data frame of matrix with expression values and calculates scores based on gene expression.

Examples

if (FALSE) { # \dontrun{
# No examples provided
} # }